Witchey SK, Doyle MG, Fredenburg JD, St Armour G, Horman B, Odenkirk MT, Aylor DL, Baker ES, Patisaul HB. 2023. Impacts of Gestational FireMaster 550 Exposure on the Neonatal Cortex Are Sex Specific and Largely Attributable to the Organophosphate Ester Neuroendocrinology 113(12):1262-1282 PDF
Lee HK, Kwon DH, Aylor DL, Marchuk DA. 2022. A cross-species approach using an in vivo evaluation platform in mice demonstrates that sequence variation in human RABEP2 modulates ischemic stroke outcomes Am J Hum Genet 109(10):1814-1827 PDF
Lee HK, Wetzel-Strong SE, Aylor DL, Marchuk DA. 2021. A Neuroprotective Locus Modulates Ischemic Stroke Infarction Independent of Collateral Vessel Anatomy Frontiers Neuroscience 15:705160 PDF
Garbutt TA, Konganti K, Konneker T, Hillhouse A, Phelps D, Jones A, Aylor D, Threadgill DW.2020. Derivation of stable embryonic stem cell-like, but transcriptionally heterogenous, induced pluripotent stem cells from non-permissive mouse strains Mammalian genome 31(9-12):263-286 PDF
Widmayer SJ, Handel MA, Aylor DL. 2020. Age and Genetic Background Modify Hybrid Male Sterility in House Mice Genetics 216(2):585-597 PDF
Lee HK, Widmayer SJ, Huang MN, Aylor DL, Marchuk DA. 2019. Novel Neuroprotective Loci Modulating Ischemic Stroke Volume in Wild-Derived Inbred Mouse Strains Genetics 213(3):1079-1092 PDF
Patisaul HB, Fenton SE, Aylor D. 2018. Animal models of endocrine disruption Best Practice & Research Clinical Endocrinology & Metabolism 32(3):283-297 PDF
Garbutt TA, Konneker TI, Konganti K, Hillhouse AE, Swift-Haire F, Jones A, Phelps D, Aylor DL, Threadgill DW. 2018. Permissiveness to form pluripotent stem cells may be an evolutionarily derived characteristic in Mus musculus Scientific reports 8(1):14706 PDF
Wang T, Pehrsson EC, Purushotham D, Li D, Zhuo X, Zhang B, Lawson HA, Province MA, Krapp C, Lan Y, Coarfa C, Katz TA, Tang WY, Wang Z, Biswal S, Rajagopalan S, Colacino JA, Tsai ZT, Sartor MA, Neier K, Dolinoy DC, Pinto J, Hamanaka RB, Mutlu GM, Patisaul HB, Aylor DL, Crawford GE, Wiltshire T, Chadwick LH, Duncan CG, Garton AE, McAllister KA; TaRGET II Consortium; Bartolomei MS, Walker CL, Tyson FL. 2018. The NIEHS TaRGET II Consortium and environmental epigenomics Nature biotechnology 36(3):225-227 PDF
Venkatratnam A, House JS, Konganti K, McKenney C, Threadgill DW, Chiu WA, Aylor DL, Wright FA, Rusyn I. 2018. Population-based dose-response analysis of liver transcriptional response to trichloroethylene in mouse Mamm Genome 29(1-2):168-181 PDF
Venkatratnam A, Furuya S, Kosyk O, Gold A, Bodnar W, Konganti K, Threadgill DW, Gillespie KM, Aylor DL, Wright FA, Chiu WA, Rusyn I. 2017. Editor's Highlight: Collaborative Cross Mouse Population Enables Refinements to Characterization of the Variability in Toxicokinetics of Trichloroethylene and Provides Genetic Evidence for the Role of PPAR Pathway in Its Oxidative Metabolism Toxicological Sciences 158(1):48-62 PDF
Shorter JR, Odet F, Aylor DL, Pan W, Kao CY, Fu CP, Morgan AP, Greenstein S, Bell TA, Stevans AM, Feathers RW, Patel S, Cates SE, Shaw GD, Miller DR, Chesler EJ, McMillian L, O'Brien DA, Villena FP. 2017. Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross Genetics 206(2):557-572 PDF
Hunter CM, Robinson MC, Aylor DL, Singh ND. 2016. Genetic Background, Maternal Age, and Interaction Effects Mediate Rates of Crossing Over in Drosophila melanogaster Females G3 Genes Genomes Genetics 6(5):1409-16 PDF
Rebuli ME, Camacho L, Adonay ME, Reif DM, Aylor DL, Patisaul HB. 2015. Impact of Low-Dose Oral Exposure to Bisphenol A (BPA) on Juvenile and Adult Rat Exploratory and Anxiety Behavior: A CLARITY-BPA Consortium Study Toxicological Sciences 148(2):341-354 PDF
Gralinski LE, Ferris MT, Aylor DL, Whitmore AC, Green R, Frieman MB, Deming D, Menachery VD, Miller DR, Buus RJ, Bell TA, Churchill GA, Threadgill DW, Katze MG, McMillan L, Valdar W, Heise MT, Pardo-Manuel de Villena F, Baric RS. 2015. Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross PLoS Genetics 11(10):e1005504 PDF
Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci IK, Kim Y, Wang JR, Morgan AP, Calaway JD, Aylor DL, Yun Z, Bell TA, Buus RJ, Calaway ME, Didion JP, Gooch TJ, Hansen SD, Robinson NN, Shaw GD, Spence JS, Quackenbush CR, Barrick CJ, Nonneman RJ, Kim K, Xenakis J, Xie Y, Valdar W, Lenarcic AB, Wang W, Welsh CE, Fu CP, Zhang Z, Holt J, Guo Z, Threadgill DW, Tarantino LM, Miller DR, Zou F, McMillan L, Sullivan PF, Pardo-Manuel de Villena F. 2015. Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance Nat Genet 47(4):353-360 PDF
Didion JP, Morgan AP, Clayshulte AM, Mcmullan RC, Yadgary L, Petkov PM, Bell TA, Gatti DM, Crowley JJ, Hua K, Aylor DL, Bai L, Calaway M, Chesler EJ, French JE, Geiger TR, Gooch TJ, Garland T Jr, Harrill AH, Hunter K, McMillan L, Holt M, Miller DR, O'Brien DA, Paigen K, Pan W, Rowe LB, Shaw GD, Simecek P, Sullivan PF, Svenson KL, Weinstock GM, Threadgill DW, Pomp D, Churchill GA, Pardo-Manuel de Villena F. 2015. A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2 PLoS Genetics 11(2):e1004850 PDF
Odet F, Pan W, Bell TA, Goodson SG, Stevans AM, Yun Z, Aylor DL, Kao CY, McMillan L, de Villena FP, O'Brien DA. 2015. The Founder Strains of the Collaborative Cross Express a Complex Combination of Advantageous and Deleterious Traits for Male Reproduction G3 Genes Genomes Genetics 5(12);2671-83 PDF
Rutledge H, Aylor DL, Carpenter DE, Peck BC, Chines P, Ostrowski LE, Chesler EJ, Churchill GA, de Villena FP, Kelada SN. 2014. Genetic regulation of Zfp30, CXCL1, and neutrophilic inflammation in murine lung Genetics 198(2):735-45 PDF
Kelada SN, Carpenter DE, Aylor DL, Chines P, Rutledge H, Chesler EJ, Churchill GA, Pardo-Manuel de Villena F, Schwartz DA, Collins FS. 2014. Integrative genetic analysis of allergic inflammation in the murine lung Am J Respiratory Cell Molecular Biology 51(3):436-445 PDF
Phillippi J, Xie Y, Miller DR, Bell TA, Zhang Z, Lenarcic AB, Aylor DL, Krovi SH, Threadgill DW, de Villena FP, Wang W, Valdar W, Frelinger JA. 2014. Using the emerging Collaborative Cross to probe the immune system Genes Immun 15(1): 38-46 PDF
Xiao H, Ciavatta D, Aylor DL, Hu P, de Villena FP, Falk RJ, Jennette JC. 2013. Genetically determined severity of anti-myeloperoxidase glomerulonephritis Am J Pathology 182(4):1219-1226 PDF
Ferris MT, Aylor DL, Bottomly D, Whitmore AC, Aicher LD, Bell TA, Bradel-Tretheway B, Bryan JT, Buus RJ, Gralinski LE, Haagmans BL, McMillan L, Miller DR, Rosenzweig E, Valdar W, Wang J, Churchill GA, Threadgill DW, McWeeney SK, Katze MG, Pardo-Manuel de Villena F, Baric RS, Heise MT. 2013. Modeling host genetic regulation of influenza pathogenesis in the collaborative cross PLoS Pathogens 9(2):e1003196 PDF
Bottomly D, Ferris MT, Aicher LD, Rosenzweig E, Whitmore A, Aylor DL, Haagmans BL, Gralinski LE, Bradel-Tretheway BG, Bryan JT, Threadgill DW, de Villena FP, Baric RS, Katze MG, Heise M, McWeeney SK. 2012. Expression quantitative trait Loci for extreme host response to influenza a in pre-collaborative cross mice G3 Genes Genomes Genetics 2(2):213-21 PDF
Kelada SN, Aylor DL, Peck BC, Ryan JF, Tavarez U, Buus RJ, Miller DR, Chesler EJ, Threadgill DW, Churchill GA, Pardo-Manuel de Villena F, Collins FS. 2012. Genetic analysis of hematological parameters in incipient lines of the collaborative cross G3 Genes Genomes Genetics 2(2):157-165 PDF
Collaborative Cross Consortium. 2012. The genome architecture of the Collaborative Cross mouse genetic reference population Genetics 190(2):389-401 PDF
Aylor DL, Valdar W, Foulds-Mathes W, Buus RJ, Verdugo RA, Baric RS, Ferris MT, Frelinger JA, Heise M, Frieman MB, Gralinski LE, Bell TA, Didion JD, Hua K, Nehrenberg DL, Powell CL, Steigerwalt J, Xie Y, Kelada SN, Collins FS, Yang IV, Schwartz DA, Branstetter LA, Chesler EJ, Miller DR, Spence J, Liu EY, McMillan L, Sarkar A, Wang J, Wang W, Zhang Q, Broman KW, Korstanje R, Durrant C, Mott R, Iraqi FA, Pomp D, Threadgill D, de Villena FP, Churchill GA. 2011. Genetic analysis of complex traits in the emerging Collaborative Cross Genome Research 21(8):1213-22 PDF
Mathes WF, Aylor DL, Miller DR, Churchill GA, Chesler EJ, de Villena FP, Threadgill DW, Pomp D. 2011. Architecture of energy balance traits in emerging lines of the Collaborative Cross Am J Physiol Endrocrinol Metab 300(6): E1124-34 PDF
Munger SC, Aylor DL, Syed HA, Magwene PM, Threadgill DW, Capel B. 2009. Elucidation of the transcription network governing mammalian sex determination by exploiting strain-specific susceptibility to sex reversal Genes Development 23(21):2521-2536 PDF
Aylor DL, Zeng ZB. 2008. From classical genetics to quantitative genetics to systems biology: modeling epistasis PLoS Genetics 4(3):e1000029 PDF
Zou W, Aylor DL, Zeng ZB. 2007. eQTL Viewer: visualizing how sequence variation affects genome-wide transcription BMC Bioinformatics 8:7 PDF
David L. Aylor, Eric W Price, Ignazio Carbone. 2006.SNAP: Combine and Map modules for multilocus population genetic analysis Bioinformatics 22(11):1399-401 PDF
